]Dean, here is a sample we tested from your DSP card. We tested RESET Homing, Left, Right, Up/Dn and ran through alignment test for last two days. We couldn't duplicate the problem you have. Y was always working properly throughout the tests the way it should.
Per your insisting, we will send you a new unit even though I don't agreed that it is DSP issue. I hope that it is what you claim "intermittent" issue and have the problem fixed when installed because it cost us a lot effort and $$. If you still get the issue, I will recommend that you check the motor driver, it seems that it is either a faulty motor driver or bad terminals.
[attachment=0]IMG-20150715-WA0089.jpg[/attachment
Marco